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openCyto gating
•
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0
votes
0
replies
965
views
How to construct a polygon gate?
gating
opencyto gating
6.9 years ago
justinyi10
▴ 10
1
vote
0
replies
699
views
Don't understand what's causing this error
opencyto gating
6.9 years ago
justinyi10
▴ 10
0
votes
1
reply
821
views
Error when gating from gating template
opencyto gating
6.9 years ago
justinyi10
▴ 10
0
votes
0
replies
698
views
Error while gating from gating template
opencyto gating
gating
bioconductor
6.9 years ago
justinyi10
▴ 10
0
votes
0
replies
710
views
Additional populations added when trying to gate from gating template
opencyto gating
6.9 years ago
justinyi10
▴ 10
0
votes
0
replies
623
views
Gating template for monocytes?
opencyto gating
6.9 years ago
justinyi10
▴ 10
0
votes
1
reply
775
views
Trying to read in a gating template causes error
opencyto gating
bioconductor
6.9 years ago
justinyi10
▴ 10
0
votes
0
replies
952
views
Use "gating.template" on data.table
data.table
opencyto gating
csv files
R
7.0 years ago
Rivka
• 0
0
votes
1
reply
1.9k
views
Exporting FCS files from GatingSet
flowcore
opencyto gating
flowset
updated 7.3 years ago by
Jiang, Mike
★ 1.3k • written 7.3 years ago by
jordan.xanthopoulos
• 0
2
votes
1
reply
1.0k
views
openCyto working Example: expects {flowWorkspace} but example
opencyto
bioconductor
opencyto gating
updated 7.4 years ago by
Jiang, Mike
★ 1.3k • written 7.4 years ago by
Rivka
• 0
0
votes
1
reply
2.2k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating
opencyto
flowcore
flowworkspace
updated 8.1 years ago by
Jiang, Mike
★ 1.3k • written 8.1 years ago by
anara92
• 0
1
vote
1
reply
1.2k
views
OpenCyto -- time gate and border events
opencyto gating
flowcore
flow cytometry
updated 8.1 years ago by
Jiang, Mike
★ 1.3k • written 8.1 years ago by
Ulrik Stervbo
▴ 30
0
votes
2
replies
2.4k
views
OpenCyto -- proper gating of CD45
opencyto gating
flowworkspace
updated 8.1 years ago by
Jiang, Mike
★ 1.3k • written 8.1 years ago by
Ulrik Stervbo
▴ 30
1
vote
0
replies
1.4k
views
OpenCyto - getting the gates correct
opencyto gating
8.1 years ago
Ulrik Stervbo
▴ 30
4
votes
8
replies
2.8k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust
opencyto
opencyto gating
updated 8.5 years ago by
Greg Finak
▴ 240 • written 8.6 years ago by
Viktor Thiel
• 0
0
votes
2
replies
1.6k
views
openCyto - how to get the MFI (mean fluorescence intensities)
opencyto gating
updated 8.6 years ago by
Jiang, Mike
★ 1.3k • written 8.6 years ago by
veronikag
• 0
5
votes
4
replies
3.2k
views
openCyto: Using combination gates (boolean gates)
opencyto
opencyto gating
FlowJo
updated 9.4 years ago by
Greg Finak
▴ 150 • written 9.4 years ago by
juancamilos
▴ 10
0
votes
5
replies
1.6k
views
openCyto automatic gating:
openCyto gating
9.7 years ago
thomas.mohr
▴ 20
18 results • Page
1 of 1
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Comment: Normalisation using clinical traits in RNA seq using DESeq2
by
sukeshinik5
• 0
Thank you, so much for the response. When we estimate factors of unwanted variable, which is the better options for factorisation of the va…
Comment: ChAMP not available for bioconductor 3.19
by
Macsue
• 0
Warning message:package ChAMP is not available for Bioconductor version 3.19 A version of this package for your version of R might be avail…
Comment: ChAMP not available for bioconductor 3.19
by
Macsue
• 0
> if (!require("BiocManager", quietly = TRUE)) + install.packages("BiocManager") Bioconductor version 3.19 (BiocManager 1.30.23), R 4.4…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
BioinfGuru
▴ 30
I would use biomaRt. This is what happens when annotation occurs to early. If possible I would run the DEG analysis on the original output…
Comment: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Votes
A: Analyzing data without replicates using DiffBind
A: Analyzing data without replicates using DiffBind
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
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